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PROTOCOLS
Materials are under development
Experimental Design
Design Experiment
RNA Purification, Library Prep & Sequencing
Purify RNA
Protocols
Questions
Quantitate & QC RNA
Nanodrop
Bioanalyzer
Questions
Prepare RNA-Seq Library
Illumina Library Construction
Lecture
Questions
Sequence
Illumina Sequencing Technology
Lecture
Questions
Manage and Process Data
Manage Data
Copy Data from SRA
Copy Data from DE
Quality Control Raw Sequence Data
FastQC (Green Line)
FastQC (DE)
Questions
Filter & Trim Reads
FastX Toolkit
FastX Toolkit (Green Line)
FastX Toolkit (DE)
Questions
Map & Count Reads
TopHat
TopHat (Green Line)
TopHat (DE)
Questions
Determine Differential Gene Expression
CuffDiff
CuffDiff (Green Line)
CuffDiff (DE)
Questions
Analyze Results
Visualize Reads
IGV
Validate Results
Design Primers
qRT-PCR
Questions
Downstream Analyses
Build Graphs in R
Biological Pathways
Questions